ISH Data Reference Atlas AGEA Brain Explorer Documentation Help
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Human Differential Search
Enter Gene Name, Gene Symbol, NCBI Accession Number or Entrez Gene ID
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IsocortexField CA1Reticular nucleus of the thalamus
Cerebral cortex, layer 2-3Field CA3Epithalamus
Cerebral cortex, layer 4Dentate gyrusHypothalamus
Cerebral cortex, layer 5Entorhinal areaMidbrain
Cerebral cortex, layer 6aStriatumPeriaqueductal gray
Main olfactory bulbLateral septal complexPons
Accessory olfactory bulbPallidumMedulla
Piriform areaCerebellumInferior olivary complex
Hippocampal regionThalamus
Allen Mouse Brain Atlas
Search the data

Use Gene Search to find ISH data for a specific gene of interest [more]

Use Correlation to find genes with similar spatial expression profiles to a gene selected from Gene Search returns [more]

About the Allen Mouse Brain Atlas

A genome-wide, high-resolution atlas of gene expression throughout the adult mouse brain

Key features:

  • In situ hybridization image data with cellular-level resolution
  • Anatomic reference atlas
  • Advanced search and visualization tools
  • Brain Explorer® 3-D viewer
[more]

See publication in Nature