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Allen Reference Atlas

The Allen Mouse Brain Atlas includes a full-color, high-resolution anatomic reference atlas accompanied by a systematic, hierarchically organized taxonomy of mouse brain structures.

In 2011, the reference atlas was updated to enable interactive online exploration of the atlas and to provide a deeper level of 3-D annotation for informatics analysis and viewing in the Brain Explorer® 3-D viewer.

For more information, please refer to the documentation.

Coronal Atlas   132 coronal sections evenly spaced at 100 µm intervals and annotated to detail numerous brain structures
Sagittal Atlas   21 sagittal sections spaced at 200 µm intervals and annotated for 71 major brain regions identified at the top level(s) of the brain structure hierarchal tree
Launch interactive atlas viewer: [coronal] [sagittal]
View reference atlas version 1 (2008): [coronal] [sagittal]